Publications

Collin P. Gross, J. Emmett Duffy, Kevin A. Hovel, Pamela L. Reynolds, Christoffer Boström, Katharyn E. Boyer, Mathieu Cusson, Johan Eklöf, Aschwin H. Engelen, Britas Klemens Eriksson, F. Joel Fodrie, John N. Griffin, Clara M. Hereu, Masakazu Hori, A. Randall Hughes, Mikhail V. Ivanov, Pablo Jorgensen, Melissa R. Kardish, Claudia Kruschel, Kun-Seop Lee, Jonathan Lefcheck, Karen McGlathery, Per-Olav Moksnes, Masahiro Nakaoka, Mary I. O’Connor, Nessa E. O’Connor, Jeanine L. Olsen, Robert J. Orth, Bradley J. Peterson, Henning Reiss, Francesca Rossi, Jennifer Ruesink, Erik E. Sotka, Jonas Thormar, Fiona Tomas, Richard Unsworth, Erin P. Voigt, Matthew A. Whalen, Shelby L. Ziegler, John J. Stachowicz. (2024). A Latitudinal Cline in the Taxonomic Structure of Eelgrass Epifaunal Communities is Associated With Plant Genetic Diversity. Global Ecology and Biogeography 0:e13918. https://doi.org/10.1111/geb.13918

Alterio, M., Tobias, M., Koehl, A., Woods, A., Sun, K., Campbell, M., and Graves, C. (2024). Who serves where: A geospatial analysis of access to endocrine surgeons in the United States and Puerto Rico. Surgery 175, no. 1: 32–40. https://doi.org/10.1016/j.surg.2023.06.055

Brodie, E. Knapp, E., Brooks, W., Drury, S. and Ritchie, M. (2024). Forest thinning and prescribed burning treatments reduce wildfire severity and buffer the impacts of severe fire weather.” Fire Ecology 20, no. 1: 17.
https://doi.org/10.1186/s42408-023-00241-z

Tobias, M., and Sibbett, S. (2024). Fire and lies: Did the Berkeley fire of 1923 contribute to the tunnel fire of 1991?: Part 1: Fire.” California History 101, no. 2: 22–45. https://doi.org/10.1525/ch.2024.101.2.22

Meyer, O. L., Harrati, A., Gavett B. E., Farias, S. T., Whitmer, R.A., Widaman, K., Hoang, V., Tobias, M. and Mungas D. (2023). Effects of early-life environment and adulthood SES on cognitive change in a multiethnic cohort.” Journal of the International Neuropsychological Society 29, no. 8: 742–50.  https://doi.org/10.1017/S135561772200087X

Zillig, M., Brooks, W., and Fleishman, E. (2023). Shifts in elevational distributions of Montane birds in a temperate, arid ecosystem. Authorea. https://doi.org/10.22541/au.167507645.55881733/v1

Dovers, E., Brooks, W., Popovic, G., and Warton, D. (2023). Fast, approximate maximum likelihood estimation of Log-Gaussian Cox processes.” Journal of Computational and Graphical Statistics 32, no. 4: 1660–70.
https://doi.org/10.1080/10618600.2023.2182311

Rodrigo-Comino, J., Caballero-Calvo, A. Almazroui, M., Jiménez-Olivencia, Y., Porcel, L., Tobias, M., Nuevo López, A. and María Senciales, J. (2023). Combining Multiple Geostatistical Analyses to assess the past, present, and future of fragile Mediterranean Deltaic environments. Journal of Geochemical Exploration 252: 107265. https://doi.org/10.1016/j.gexplo.2023.107265

Meyer, O. L., Besser, L., Tobias, M., George, K., Gavett, B., Farias, S., Bhagat, N., Pham, M., Chrisphonte, S., and Whitmer, R. (2023). Neighborhood socioeconomic status and segregation linked to cognitive decline. Alzheimer’s & Dementia: Diagnosis, Assessment & Disease Monitoring 15, no. 1: e12401.
https://doi.org/10.1002/dad2.12401

Tobias, M., Ulle, N., and Shoemaker, T. (2023). Fourteen things you need to know about collaborating with data scientists. Nature.
https://doi.org/10.1038/d41586-023-02291-4

Pizelo, S., Koehl, A., Nagda, C., & Stahmer, C.S. (2023). Project Quintessence: Examining Textual Dimensionality with a Dynamic Corpus Explorer. Digital Humanities Quarterly, 17.2. https://digitalhumanities.org/dhq/vol/17/3/000709/000709.html

Alterio, M., Von Davies, R., Tobias, M., Koehl, A., Tang, J., Kopp, D. (2023). A Geospatial Analysis of Abortion Access in the United States after the Reversal of Roe v Wade. Obstetrics & Gynecology. https://doi.org/10.1097/AOG.0000000000005329

Tobias, M., and Myles, C.C. (2022). Wine, culture, and environment: a study of the Sierra (Nevada) Foothills American viticultural area. In Routledge Handbook of Wine & Culture. Routledge.

Rosenthal, L.M., Brooks, W.R., & Rizzo, D.M. (2021). Species densities, assembly order, and competence jointly determine the diversity-disease relationship. Ecology: e3622. https://doi.org/10.1002/ecy.3622

Fitch, D.T., Carlen, J., & Handy, S.L. (2021). What makes bicyclists comfortable? Insights from a visual preference survey of casual and prospective bicyclists. Transportation Research Part A: Policy and Practice, 155, 434-449. https://doi.org/10.1016/j.tra.2021.11.008

DeVincentis, A. J., Guillon, H., Díaz Gómez, R., Patterson, N. K., van den Brandeler, F., Koehl, A., Ortiz-Partida, J. P., Garza-Díaz, L. E., Gamez-Rodríguez, J., Goharian, E., & Sandoval Solis, S. (2021). Bright and blind spots of water research in Latin America and the Caribbean. Hydrology and Earth System Sciences, 25(8), 4631–4650. https://doi.org/10.5194/hess-25-4631-2021

Meyer, O. L., Besser, L., Mitsova, D., Booker, M., Luu, E., Tobias, M., Farias, S. T., Mungas, D., DeCarli, C., & Whitmer, R. A. (2021). Neighborhood racial/ethnic segregation and cognitive decline in older adults. Social Science & Medicine, 114226. https://doi.org/10.1016/j.socscimed.2021.114226

Meyer, O. L., Besser, L., Mitsova, D., Booker, M., Luu, E., Mitsova, D., Tobias, M., Whitmer, R. A., Farias, S. T., andn Mungas, D. (2021). Neighborhood racial/ethnic segregation and cognitive decline in older adults. Alzheimer’s & Dementia 17, no. S10 (2021): e055745. https://doi.org/10.1002/alz.055745

Tobias, M.M., Bostic, D.J., and Sibbett, S.S. (2021). Route logic of the Central Pacific Railroad, 1861–1869. California History 98, no. 2: 74–99.  https://doi.org/https://doi.org/10.1525/ch.2021.98.2.74

Tobias, M.M., and Mandel, A.I. (2021). Literature mapper: A QGIS plugin for georeferencing citations in Zotero. Air, Soil, & Water Research 14: 1–8.  https://doi.org/https://doi.org/10.1177/11786221211009209

Fitch, D., Carlen, J., & Handy, S. (2020). Making Bicycling Comfortable: Identifying Minimum Infrastructure Needs by Population Segments Using a Video Survey. https://doi.org/10.7922/G2ZP44C0

Hicks, D. J. (2020). Census Demographics and Chlorpyrifos Use in California’s Central Valley, 2011–15: A Distributional Environmental Justice Analysis. International Journal of Environmental Research and Public Health, 17(7), 2593. https://doi.org/10.3390/ijerph17072593

Hernán, G., Ortega, M. J., Henderson, J., Alós, J., Boyer, K., Cimon, S., Combes, V., Cusson, M., Hereu, C. M., Hessing‐Lewis, M., Hovel, K., Jorgensen, P., Kiriakopolos, S., Kollars, N., O´Connor, M. I., Olsen, J., Reynolds, P. L., Ruesink, J., Voigt, E., & Tomas, F. (2020). Latitudinal variation in plant defence against herbivory in a marine foundation species does not follow a linear pattern: The importance of resource availability. Global Ecology and Biogeography, 00, 1–15. https://doi.org/10.1111/geb.13217

Myles, C. C., Tobias, M., & McKinnon, I. (2020). ‘A big fish in a small pond’: How Arizona wine country was made. In Agritourism, Wine Tourism, and Craft Beer Tourism (pp. 93-112). Routledge. https://www.taylorfrancis.com/chapters/edit/10.4324/9780429464102-8/big-fish-small-pond-colleen-myles-michele-tobias-innisfree-mckinnon

Hwang, L. J., Pauloo, R. A., & Carlen, J. (2020). Assessing the Impact of Outreach Through Software Citation for Community Software in Geodynamics. Computing in Science Engineering, 22(1), 16–25. https://doi.org/10.1109/MCSE.2019.2940221

Niku, J., Brooks, W., Herliansyah, R., Hui, F., Taskinen S., and Warton, D. (2019). Efficient estimation of generalized linear latent variable models. PLOS ONE 14, no. 5: e0216129. https://doi.org/10.1371/journal.pone.0216129.

Hicks, D. J., Coil, D. A., Stahmer, C. G., & Eisen, J. A. (2019). Network analysis to evaluate the impact of research funding on research community consolidation. PLOS ONE, 14(6), e0218273. https://doi.org/10.1371/journal.pone.0218273

Hicks, D. J., & Simmons, R. (2019). The National Robotics Initiative: A Five-Year Retrospective. IEEE Robotics Automation Magazine, 26(3), 70–77. https://doi.org/10.1109/MRA.2019.2912860

Reiss K, Fieten NN, Reynolds PL, & Eriksson BK. (2019). Ecosystem function of subarctic Zostera marina meadows: Influence of shoot density on fish predators and predation rates. Marine Ecology Progress Series, 630, 41–54. DOI: https://doi.org/10.3354/meps13115

Hicks, D. J., Stahmer, C., & Smith, M. (2018). Impacting Capabilities: A Conceptual Framework for the Social Value of Research. Frontiers in Research Metrics and Analytics, 3, 24. https://doi.org/10.3389/frma.2018.00024

Reynolds, P. L., Stachowicz, J. J., Hovel, K., Boström, C., Boyer, K., Cusson, M., Eklöf, J. S., Engel, F. G., Engelen, A. H., Eriksson, B. K., Fodrie, F. J., Griffin, J. N., Hereu, C. M., Hori, M., Hanley, T. C., Ivanov, M., Jorgensen, P., Kruschel, C., Lee, K.-S., McGlathery, K., Moksnes, P.‐O., Nakaoka, M., O’Connor, M.I., O’Connor, N.E., Orth, R.J., Rossi, F., Ruesink, J., Sotka, E.E., Thormar, J., Tomas, F., Unsworth, R.K.F., Whalen, M.A. andDuffy, J. E. (2018). Latitude, temperature, and habitat complexity predict predation pressure in eelgrass beds across the Northern Hemisphere. Ecology, 99(1), 29–35. https://doi.org/10.1002/ecy.2064

Röhr, M. E., Holmer, M., Baum, J. K., Björk, M., Boyer, K., Chin, D., Chalifour, L., Cimon, S., Cusson, M., Dahl, M., Deyanova, D., Duffy, J. E., Eklöf, J. S., Geyer, J. K., Griffin, J. N., Gullström, M., Hereu, C. M., Hori, M., Hovel, K. A., Hughes, A. R., Jorgensen, P., Kiriakopolos, S. L., Moksnes, P. O., Nakaoka, M., O’Connor, M. I., Peterson, B., Reiss, K., Reynolds, P. L., Rossi, F., Ruesink, J., Santos, R., Stachowicz, J. J. , Tomas, F., Lee, K. S., Unsworth, R. K. F., and Boström, C. (2018). Blue Carbon Storage Capacity of Temperate Eelgrass (Zostera marina) Meadows. Global Biogeochemical Cycles, 32(10), 1457–1475. https://doi.org/10.1029/2018GB005941

Ruesink, J. L., Stachowicz, J. J., Reynolds, P. L., Boström, C., Cusson, M., Douglass, J., Eklöf, J., Engelen, A. H., Hori, M., Hovel, K., Iken, K., Moksnes, P.-O., Nakaoka, M., O’Connor, M. I., Olsen, J. L., Sotka, E. E., Whalen, M. A., & Duffy, J. E. (2018). Form–function relationships in a marine foundation species depend on scale: A shoot to global perspective from a distributed ecological experiment. Oikos, 127(3), 364–374. https://doi.org/10.1111/oik.04270